AL109936.2 (novel transcript) - Rat Genome Database

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Gene: AL109936.2 (novel transcript) Homo sapiens
Analyze
Symbol: AL109936.2
Name: novel transcript
RGD ID: 16565963
Description:
Type: lncrna
Previously known as: AL109936.3
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl123,378,380 - 23,379,029 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:267
Count of miRNA genes:253
Interacting mature miRNAs:257
Transcripts:ENST00000605350
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 1 1 5 29 6 1
Low 1898 985 1537 568 374 413 2939 1525 729 343 889 1218 157 308 2135 1
Below cutoff 485 1454 168 48 639 45 1122 616 2359 62 433 320 13 698 570 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000605350
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl123,378,380 - 23,379,029 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL109936.2 COSMIC
Ensembl Genes ENSG00000271420 Ensembl
GTEx ENSG00000271420 GTEx
Human Proteome Map AL109936.2 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-03 AL109936.2  novel transcript  AL109936.3  novel transcript  Symbol and/or name change 19259462 PROVISIONAL
2020-02-07 AL109936.3  novel transcript  AL109936.2  novel transcript  Symbol and/or name change 19259462 PROVISIONAL