AL391422.4 (novel transcript, antisense to PXDC1) - Rat Genome Database

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Gene: AL391422.4 (novel transcript, antisense to PXDC1) Homo sapiens
Analyze
Symbol: AL391422.4
Name: novel transcript, antisense to PXDC1
RGD ID: 16565550
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl63,751,111 - 3,753,871 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:96
Count of miRNA genes:94
Interacting mature miRNAs:94
Transcripts:ENST00000603791
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 64 1177 591 102 2 45 1275 57 133 70 183 808 62 468 775 3
Low 2308 1058 1128 520 663 419 2903 1939 3377 334 1252 775 107 736 1862 1
Below cutoff 44 691 1 940 177 190 187 14 12 21 1 151

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000603791
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl63,751,111 - 3,753,871 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL391422.4 COSMIC
Ensembl Genes ENSG00000270504 Ensembl
GTEx ENSG00000270504 GTEx
Human Proteome Map AL391422.4 Human Proteome Map