AC090181.2 (novel transcript, sense intronic to TSPAN3) - Rat Genome Database

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Gene: AC090181.2 (novel transcript, sense intronic to TSPAN3) Homo sapiens
Analyze
Symbol: AC090181.2
Name: novel transcript, sense intronic to TSPAN3
RGD ID: 16565312
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1577,067,654 - 77,068,325 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:149
Count of miRNA genes:147
Interacting mature miRNAs:149
Transcripts:ENST00000602975
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 22 1 6 3 107 3 13 16 44 13 45 78 7
Low 1859 1781 1249 297 1398 153 3293 1005 2492 260 1293 1485 157 1168 1871 4
Below cutoff 531 1076 406 267 362 253 976 1087 1101 138 103 42 13 26 851

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000602975
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1577,067,654 - 77,068,325 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC090181.2 COSMIC
Ensembl Genes ENSG00000269951 Ensembl
GTEx ENSG00000269951 GTEx
Human Proteome Map AC090181.2 Human Proteome Map