AC135178.6 (novel transcript) - Rat Genome Database

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Gene: AC135178.6 (novel transcript) Homo sapiens
Analyze
Symbol: AC135178.6
Name: novel transcript
RGD ID: 16565309
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl178,277,763 - 8,278,436 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:245
Count of miRNA genes:235
Interacting mature miRNAs:242
Transcripts:ENST00000602597
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 9 10 4 7 6 25 3 1
Low 1891 1188 1553 518 1134 416 3473 1115 3457 349 1393 1424 113 1114 1976 4
Below cutoff 518 1483 166 100 566 46 809 1012 242 58 30 172 56 88 751

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000602597
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,277,763 - 8,278,436 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC135178.6 COSMIC
Ensembl Genes ENSG00000269947 Ensembl
GTEx ENSG00000269947 GTEx
Human Proteome Map AC135178.6 Human Proteome Map