AC024257.3 (novel transcript, antisense to OR10AD1) - Rat Genome Database

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Gene: AC024257.3 (novel transcript, antisense to OR10AD1) Homo sapiens
Analyze
Symbol: AC024257.3
Name: novel transcript, antisense to OR10AD1
RGD ID: 16565204
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1248,198,357 - 48,230,275 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1381
Count of miRNA genes:795
Interacting mature miRNAs:900
Transcripts:ENST00000595310
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 2 2
Low 1454 669 1131 136 858 18 979 618 1483 155 1177 1180 123 305 771 1
Below cutoff 911 2273 480 380 1005 339 3277 1529 2165 214 211 362 43 893 1981 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000595310
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1248,198,387 - 48,202,031 (+)Ensembl
RefSeq Acc Id: ENST00000647575
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1248,198,357 - 48,230,275 (+)Ensembl
RefSeq Acc Id: ENST00000654485
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1248,212,746 - 48,229,409 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC024257.3 COSMIC
Ensembl Genes ENSG00000269514 Ensembl
GTEx ENSG00000269514 GTEx
Human Proteome Map AC024257.3 Human Proteome Map