AC078899.4 (novel zinc finger protein pseudogene) - Rat Genome Database

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Gene: AC078899.4 (novel zinc finger protein pseudogene) Homo sapiens
Analyze
Symbol: AC078899.4
Name: novel zinc finger protein pseudogene
RGD ID: 16565145
Description:
Type: unprocessed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1920,295,089 - 20,303,794 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:123
Count of miRNA genes:120
Interacting mature miRNAs:123
Transcripts:ENST00000599065
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 234 2 3 236
Low 2 438 2 21 2 24 6 24 24 50 457
Below cutoff 613 465 310 95 425 57 986 376 949 147 743 334 42 297 485 4

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000593952
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1920,295,089 - 20,303,794 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC078899.4 COSMIC
Ensembl Genes ENSG00000269274 Ensembl
GTEx ENSG00000269274 GTEx
Human Proteome Map AC078899.4 Human Proteome Map