AC005387.1 (novel transcript, antisense to FKBP8) - Rat Genome Database

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Gene: AC005387.1 (novel transcript, antisense to FKBP8) Homo sapiens
Analyze
Symbol: AC005387.1
Name: novel transcript, antisense to FKBP8
RGD ID: 16565080
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1918,531,613 - 18,532,632 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:362
Count of miRNA genes:335
Interacting mature miRNAs:353
Transcripts:ENST00000597837
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 41 9 4 63 4 8 11 1 33 12 1 8
Low 2298 2518 1593 532 1687 370 3662 1228 2824 293 1330 1456 170 1158 2158 1
Below cutoff 104 395 75 48 86 51 593 850 821 94 59 96 41 536 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000597837
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1918,531,613 - 18,532,632 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC005387.1 COSMIC
Ensembl Genes ENSG00000268938 Ensembl
GTEx ENSG00000268938 GTEx
Human Proteome Map AC005387.1 Human Proteome Map