AC012313.4 (novel transcript) - Rat Genome Database

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Gene: AC012313.4 (novel transcript) Homo sapiens
Analyze
Symbol: AC012313.4
Name: novel transcript
RGD ID: 16564993
Description:
Type: tec
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1958,418,560 - 58,419,310 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:108
Count of miRNA genes:107
Interacting mature miRNAs:108
Transcripts:ENST00000596296
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 9 3 3 8 3 5 3 13 3 23 36 1
Low 1881 1677 1426 368 1001 248 3671 1798 2919 367 1350 1416 131 849 2381 4
Below cutoff 511 857 278 234 484 198 649 372 739 45 72 141 36 338 391

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000596296
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1958,418,560 - 58,419,310 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC012313.4 COSMIC
Ensembl Genes ENSG00000268543 Ensembl
GTEx ENSG00000268543 GTEx
Human Proteome Map AC012313.4 Human Proteome Map