AC025588.1 (pentatricopeptide repeat domain 3 pseudogene) - Rat Genome Database

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Gene: AC025588.1 (pentatricopeptide repeat domain 3 pseudogene) Homo sapiens
Analyze
Symbol: AC025588.1
Name: pentatricopeptide repeat domain 3 pseudogene
RGD ID: 16564962
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1957,175,233 - 57,177,921 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:107
Interacting mature miRNAs:112
Transcripts:ENST00000594883
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 142 598 471 31 210 13 565 96 370 71 762 552 18 172 421 1
Below cutoff 1935 1744 978 337 925 197 3199 1631 3157 278 601 901 144 998 1941 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000594883
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1957,175,233 - 57,177,921 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC025588.1 COSMIC
Ensembl Genes ENSG00000268379 Ensembl
GTEx ENSG00000268379 GTEx
Human Proteome Map AC025588.1 Human Proteome Map