AC010680.1 (novel transcript, antisense to titin) - Rat Genome Database

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Gene: AC010680.1 (novel transcript, antisense to titin) Homo sapiens
Analyze
Symbol: AC010680.1
Name: novel transcript, antisense to titin
RGD ID: 16564844
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl2178,723,457 - 178,727,046 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:141
Count of miRNA genes:139
Interacting mature miRNAs:141
Transcripts:ENST00000590024
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 4 5
Low 24 743 18 9 57 436 107 5 142 21 57
Below cutoff 1972 1528 1192 206 692 90 3217 1679 3379 214 1012 1198 116 923 2344 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000590024
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2178,723,457 - 178,727,046 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC010680.1 COSMIC
Ensembl Genes ENSG00000267784 Ensembl
GTEx ENSG00000267784 GTEx
Human Proteome Map AC010680.1 Human Proteome Map