AC015961.2 (novel transcript, antisense to CELF4) - Rat Genome Database

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Gene: AC015961.2 (novel transcript, antisense to CELF4) Homo sapiens
Analyze
Symbol: AC015961.2
Name: novel transcript, antisense to CELF4
RGD ID: 16564799
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1837,243,776 - 37,247,506 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:120
Count of miRNA genes:114
Interacting mature miRNAs:120
Transcripts:ENST00000589281
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 49 4 4 8 499 1 419 11 8
Low 2102 1693 1354 341 731 193 3619 1230 3087 308 956 1459 152 1127 2214 3
Below cutoff 248 977 267 226 619 217 644 889 116 86 55 95 14 71 520 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000589281
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1837,243,776 - 37,247,506 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC015961.2 COSMIC
Ensembl Genes ENSG00000267707 Ensembl
GTEx ENSG00000267707 GTEx
Human Proteome Map AC015961.2 Human Proteome Map