ERVK-28 (endogenous retrovirus group K member 28) - Rat Genome Database

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Gene: ERVK-28 (endogenous retrovirus group K member 28) Homo sapiens
Analyze
Symbol: ERVK-28
Name: endogenous retrovirus group K member 28
RGD ID: 16564792
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1927,638,483 - 27,646,483 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:480
Count of miRNA genes:165
Interacting mature miRNAs:169
Transcripts:ENST00000589010, ENST00000598435, ENST00000600419
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High 1 1
Medium 7 1 1 5 1 154 2 2 29 15 12
Low 117 12 117 76 259 79 180 52 167 174 194 258 8 84 9 3
Below cutoff 412 375 465 135 196 116 1055 458 1581 112 408 397 20 438 662 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000589010
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1927,638,509 - 27,646,483 (-)Ensembl
RefSeq Acc Id: ENST00000598435
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1927,638,483 - 27,640,638 (-)Ensembl
RefSeq Acc Id: ENST00000600419
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1927,638,483 - 27,640,638 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ERVK-28 COSMIC
Ensembl Genes ENSG00000267696 Ensembl
GTEx ENSG00000267696 GTEx
Human Proteome Map ERVK-28 Human Proteome Map