AC138430.1 (novel transcript, readthrough between TM6SF2 and HAPLN4) - Rat Genome Database

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Gene: AC138430.1 (novel transcript, readthrough between TM6SF2 and HAPLN4) Homo sapiens
Analyze
Symbol: AC138430.1
Name: novel transcript, readthrough between TM6SF2 and HAPLN4
RGD ID: 16564751
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1919,254,748 - 19,273,369 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:267
Count of miRNA genes:254
Interacting mature miRNAs:267
Transcripts:ENST00000586064
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system appendage entire extraembryonic component
High
Medium
Low 8 4 8 4 51 4 131 8 32 5 12 23 1 1
Below cutoff 126 12 104 91 164 95 135 52 92 54 138 199 8 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000586064
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1919,254,748 - 19,273,369 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC138430.1 COSMIC
Ensembl Genes ENSG00000267629 Ensembl
GTEx ENSG00000267629 GTEx
Human Proteome Map AC138430.1 Human Proteome Map