AC022966.1 (novel transcript, antisense to TIMP2) - Rat Genome Database

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Gene: AC022966.1 (novel transcript, antisense to TIMP2) Homo sapiens
Analyze
Symbol: AC022966.1
Name: novel transcript, antisense to TIMP2
RGD ID: 16564732
Description:
Type: lncrna
Previously known as: AC022966.2
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1778,855,478 - 78,855,844 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:335
Count of miRNA genes:304
Interacting mature miRNAs:324
Transcripts:ENST00000587434
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system entire extraembryonic component
High
Medium 3 1 4 2 1 19 6 13 5 8 5
Low 27 12 7 26 10 8 34 34 16 31 60 2
Below cutoff 9 3 11 10 30 10 3 3 4 6

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000587434
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1778,855,478 - 78,855,844 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC022966.1 COSMIC
Ensembl Genes ENSG00000267601 Ensembl
GTEx ENSG00000267601 GTEx
Human Proteome Map AC022966.1 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-04-30 AC022966.1  novel transcript, antisense to TIMP2  AC022966.2  novel transcript, antisense to TIMP2  Symbol and/or name change 19259462 PROVISIONAL
2020-02-07 AC022966.2  novel transcript, antisense to TIMP2  AC022966.1  novel transcript, antisense to TIMP2  Symbol and/or name change 19259462 PROVISIONAL