AC010327.4 (novel transcript, antisense to C19orf51 and SYT5) - Rat Genome Database

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Gene: AC010327.4 (novel transcript, antisense to C19orf51 and SYT5) Homo sapiens
Analyze
Symbol: AC010327.4
Name: novel transcript, antisense to C19orf51 and SYT5
RGD ID: 16564718
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1955,158,939 - 55,177,540 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:224
Count of miRNA genes:221
Interacting mature miRNAs:224
Transcripts:ENST00000591665
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 34 1 3 36 23 1
Low 30 139 314 10 14 10 165 172 1456 19 408 87 7 11 110
Below cutoff 903 1075 565 150 353 123 1737 829 1298 99 331 610 31 336 1024 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000591665
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1955,158,939 - 55,177,540 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC010327.4 COSMIC
Ensembl Genes ENSG00000267577 Ensembl
GTEx ENSG00000267577 GTEx
Human Proteome Map AC010327.4 Human Proteome Map