AC090236.2 (novel transcript, sense intronic to NEDD4L) - Rat Genome Database

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Gene: AC090236.2 (novel transcript, sense intronic to NEDD4L) Homo sapiens
Analyze
Symbol: AC090236.2
Name: novel transcript, sense intronic to NEDD4L
RGD ID: 16564677
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1858,371,566 - 58,372,666 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:201
Count of miRNA genes:185
Interacting mature miRNAs:190
Transcripts:ENST00000587933
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1 1
Low 572 202 342 150 170 47 1198 224 697 122 390 711 107 47 831 3
Below cutoff 1468 1197 1015 294 688 238 2216 1405 1960 241 827 784 63 796 1288 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000587933
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1858,371,566 - 58,372,666 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC090236.2 COSMIC
Ensembl Genes ENSG00000267504 Ensembl
GTEx ENSG00000267504 GTEx
Human Proteome Map AC090236.2 Human Proteome Map