AC024575.1 (novel transcript, antisense to SWSAP1) - Rat Genome Database

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Gene: AC024575.1 (novel transcript, antisense to SWSAP1) Homo sapiens
Analyze
Symbol: AC024575.1
Name: novel transcript, antisense to SWSAP1
RGD ID: 16564550
Description:
Type: lncrna
Previously known as: AC024575.2
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1911,368,123 - 11,374,935 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:274
Count of miRNA genes:259
Interacting mature miRNAs:272
Transcripts:ENST00000590399
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 3 17 1 1 23 3
Low 2264 1841 1669 575 1476 420 3754 1574 3399 385 1392 1524 167 958 2403 3
Below cutoff 158 1024 49 45 392 42 564 561 302 31 27 67 3 230 365 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000590399
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1911,368,118 - 11,374,935 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC024575.1 COSMIC
Ensembl Genes ENSG00000267277 Ensembl
GTEx ENSG00000267277 GTEx
Human Proteome Map AC024575.1 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 AC024575.1  novel transcript, antisense to SWSAP1  AC024575.2  novel transcript, antisense to SWSAP1  Symbol and/or name change 19259462 PROVISIONAL
2020-02-07 AC024575.2  novel transcript, antisense to SWSAP1  AC024575.1  novel transcript, antisense to SWSAP1  Symbol and/or name change 19259462 PROVISIONAL