AC008752.1 (novel transcript) - Rat Genome Database

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Gene: AC008752.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC008752.1
Name: novel transcript
RGD ID: 16564354
Description:
Type: lncrna
Previously known as: AC008752.2
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl199,793,621 - 9,802,301 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:382
Count of miRNA genes:317
Interacting mature miRNAs:340
Transcripts:ENST00000401283, ENST00000590046
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 126
Low 50 22 86 20 130 20 167 28 60 39 449 114 1 6 32 1
Below cutoff 762 590 669 187 385 147 1188 407 951 184 504 642 47 272 741

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000590046
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl199,793,621 - 9,802,301 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC008752.1 COSMIC
Ensembl Genes ENSG00000266950 Ensembl
GTEx ENSG00000266950 GTEx
Human Proteome Map AC008752.1 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-03 AC008752.1  novel transcript  AC008752.2  novel transcript  Symbol and/or name change 19259462 PROVISIONAL
2020-02-07 AC008752.2  novel transcript  AC008752.1  novel transcript  Symbol and/or name change 19259462 PROVISIONAL