AC005746.1 (novel transcript, sense intronic to BCAS3) - Rat Genome Database

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Gene: AC005746.1 (novel transcript, sense intronic to BCAS3) Homo sapiens
Analyze
Symbol: AC005746.1
Name: novel transcript, sense intronic to BCAS3
RGD ID: 16564348
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1761,382,785 - 61,384,680 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:615
Count of miRNA genes:455
Interacting mature miRNAs:509
Transcripts:ENST00000585495, ENST00000589244
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1
Low 1049 893 198 32 334 33 727 629 319 68 621 312 6 95 580 2
Below cutoff 1309 1807 1320 451 1084 302 3164 1313 2831 253 731 1177 154 1032 1905 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000585495
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1761,383,401 - 61,384,680 (+)Ensembl
RefSeq Acc Id: ENST00000589244
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1761,382,785 - 61,383,555 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC005746.1 COSMIC
Ensembl Genes ENSG00000266934 Ensembl
GTEx ENSG00000266934 GTEx
Human Proteome Map AC005746.1 Human Proteome Map