AC134407.1 (novel transcript, antisense to BPTF) - Rat Genome Database

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Gene: AC134407.1 (novel transcript, antisense to BPTF) Homo sapiens
Analyze
Symbol: AC134407.1
Name: novel transcript, antisense to BPTF
RGD ID: 16564292
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1767,950,885 - 67,951,746 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:128
Count of miRNA genes:126
Interacting mature miRNAs:128
Transcripts:ENST00000577385
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 307 437 408 82 445 46 1121 127 554 75 663 508 36 263 616 1
Below cutoff 1590 1830 1062 400 957 280 2370 1236 2173 234 655 894 126 807 1479 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000577385
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1767,950,885 - 67,951,746 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC134407.1 COSMIC
Ensembl Genes ENSG00000266717 Ensembl
GTEx ENSG00000266717 GTEx
Human Proteome Map AC134407.1 Human Proteome Map