AP005262.1 (novel transcript) - Rat Genome Database

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Gene: AP005262.1 (novel transcript) Homo sapiens
Analyze
Symbol: AP005262.1
Name: novel transcript
RGD ID: 16564274
Description:
Type: lncrna
Previously known as: AP005262.2
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl181,509,022 - 2,049,510 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:119
Count of miRNA genes:117
Interacting mature miRNAs:117
Transcripts:ENST00000583163
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 3 3 2 3 1 2 1 3 7 9
Low 21 1 60 52 27 54 52 17 13 13 379 68 4 2 4
Below cutoff 73 71 168 130 127 127 160 41 86 39 120 121 4 110 44

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000583163
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,050 - 1,647,166 (+)Ensembl
RefSeq Acc Id: ENST00000652957
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,046 - 1,647,181 (+)Ensembl
RefSeq Acc Id: ENST00000653006
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,046 - 1,774,069 (+)Ensembl
RefSeq Acc Id: ENST00000653094
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,046 - 1,957,451 (+)Ensembl
RefSeq Acc Id: ENST00000653330
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,046 - 2,049,503 (+)Ensembl
RefSeq Acc Id: ENST00000655815
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,046 - 1,964,289 (+)Ensembl
RefSeq Acc Id: ENST00000657235
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,046 - 1,654,732 (+)Ensembl
RefSeq Acc Id: ENST00000657750
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,046 - 2,049,510 (+)Ensembl
RefSeq Acc Id: ENST00000660136
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,054 - 1,841,345 (+)Ensembl
RefSeq Acc Id: ENST00000660357
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,046 - 2,049,510 (+)Ensembl
RefSeq Acc Id: ENST00000661994
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,031 - 2,049,510 (+)Ensembl
RefSeq Acc Id: ENST00000662133
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,046 - 2,049,510 (+)Ensembl
RefSeq Acc Id: ENST00000662293
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,046 - 1,830,043 (+)Ensembl
RefSeq Acc Id: ENST00000663472
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,222 - 1,647,166 (+)Ensembl
RefSeq Acc Id: ENST00000663660
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,055 - 1,646,751 (+)Ensembl
RefSeq Acc Id: ENST00000663966
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,046 - 1,774,069 (+)Ensembl
RefSeq Acc Id: ENST00000665135
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,053 - 1,844,736 (+)Ensembl
RefSeq Acc Id: ENST00000665474
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,046 - 1,646,754 (+)Ensembl
RefSeq Acc Id: ENST00000665846
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,022 - 1,647,463 (+)Ensembl
RefSeq Acc Id: ENST00000668483
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,046 - 1,774,146 (+)Ensembl
RefSeq Acc Id: ENST00000668980
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,022 - 1,707,134 (+)Ensembl
RefSeq Acc Id: ENST00000669226
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,046 - 1,829,553 (+)Ensembl
RefSeq Acc Id: ENST00000670283
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,780,187 - 1,830,043 (+)Ensembl
RefSeq Acc Id: ENST00000671074
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,509,046 - 2,049,510 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AP005262.1 COSMIC
Ensembl Genes ENSG00000266602 Ensembl
GTEx ENSG00000266602 GTEx
Human Proteome Map AP005262.1 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-04-30 AP005262.1  novel transcript  AP005262.2  novel transcript  Symbol and/or name change 19259462 PROVISIONAL