AC005730.3 (novel transcript) - Rat Genome Database

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Gene: AC005730.3 (novel transcript) Homo sapiens
Analyze
Symbol: AC005730.3
Name: novel transcript
RGD ID: 16564194
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1719,929,372 - 19,929,737 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:47
Interacting mature miRNAs:47
Transcripts:ENST00000583067
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 3 4
Low 313 472 347 122 924 91 769 135 395 113 482 526 40 227 381 4
Below cutoff 1234 1384 880 324 656 227 1893 832 1593 188 624 737 101 672 1106

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000583067
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1719,929,372 - 19,929,737 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC005730.3 COSMIC
Ensembl Genes ENSG00000266126 Ensembl
GTEx ENSG00000266126 GTEx
Human Proteome Map AC005730.3 Human Proteome Map