AL353996.1 (novel pseudogene) - Rat Genome Database

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Gene: AL353996.1 (novel pseudogene) Homo sapiens
Analyze
Symbol: AL353996.1
Name: novel pseudogene
RGD ID: 16564146
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1716,893,198 - 16,893,429 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:314
Count of miRNA genes:289
Interacting mature miRNAs:309
Transcripts:ENST00000581889
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1
Low 1 3 1 2 3 1 150 3 1
Below cutoff 62 48 29 8 36 5 111 41 74 1 170 32 3 23 74 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000581889
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,893,198 - 16,893,429 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL353996.1 COSMIC
Ensembl Genes ENSG00000265853 Ensembl
GTEx ENSG00000265853 GTEx
Human Proteome Map AL353996.1 Human Proteome Map