AC104984.2 (novel transcript, antisense to EFCAB5) - Rat Genome Database

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Gene: AC104984.2 (novel transcript, antisense to EFCAB5) Homo sapiens
Analyze
Symbol: AC104984.2
Name: novel transcript, antisense to EFCAB5
RGD ID: 16564064
Description:
Type: lncrna
Previously known as: AC104984.3
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1730,090,366 - 30,117,497 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:180
Count of miRNA genes:172
Interacting mature miRNAs:174
Transcripts:ENST00000582938
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2
Low 322 268 498 77 464 54 502 105 344 60 717 498 24 192 248 1
Below cutoff 902 830 651 254 439 189 1138 531 964 176 340 559 72 388 661 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000582938
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1730,090,366 - 30,117,497 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC104984.2 COSMIC
Ensembl Genes ENSG00000265394 Ensembl
GTEx ENSG00000265394 GTEx
Human Proteome Map AC104984.2 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 AC104984.2  novel transcript, antisense to EFCAB5  AC104984.3  novel transcript, antisense to EFCAB5  Symbol and/or name change 19259462 PROVISIONAL
2020-02-07 AC104984.3  novel transcript, antisense to EFCAB5  AC104984.2  novel transcript, antisense to EFCAB5  Symbol and/or name change 19259462 PROVISIONAL