AC120057.2 (novel protein) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: AC120057.2 (novel protein) Homo sapiens
Analyze
Symbol: AC120057.2
Name: novel protein
RGD ID: 16563584
Description: ENCODES a protein that exhibits protein serine/threonine phosphatase activity (inferred)
Type: protein-coding
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl177,240,427 - 7,244,635 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:422
Count of miRNA genes:314
Interacting mature miRNAs:343
Transcripts:ENST00000570760
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system
High
Medium
Low 1 1 9 1 2 1 1
Below cutoff 42 1 42 32 52 32 45 10 41 47 73 82 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000570760   ⟹   ENSP00000466023
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,240,427 - 7,244,635 (-)Ensembl
Protein Sequences
Ensembl Protein ENSP00000466023.1
Reference Protein Sequences
RefSeq Acc Id: ENSP00000466023   ⟸   ENST00000570760
Protein Domains
FCP1 homology


Additional Information

Database Acc Id Source(s)
COSMIC AC120057.2 COSMIC
Ensembl Genes ENSG00000262526 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENST00000570760.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1000 UniProtKB/TrEMBL
GTEx ENSG00000262526 GTEx
Human Proteome Map AC120057.2 Human Proteome Map
InterPro FCP1_dom UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
Pfam NIF UniProtKB/TrEMBL
UniProt I3L401_HUMAN UniProtKB/TrEMBL