AC023908.3 (novel transcript, antisense to FSIP1) - Rat Genome Database

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Gene: AC023908.3 (novel transcript, antisense to FSIP1) Homo sapiens
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Symbol: AC023908.3
Name: novel transcript, antisense to FSIP1
RGD ID: 16563116
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: LOC105370941; uncharacterized LOC105370941
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381539,782,906 - 39,785,617 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1539,782,571 - 39,785,617 (+)EnsemblGRCh38hg38GRCh38
GRCh371540,075,107 - 40,077,818 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q14NCBI
CHM1_11540,194,450 - 40,197,161 (+)NCBICHM1_1
T2T-CHM13v2.01537,588,104 - 37,590,815 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:8889548   PMID:14702039  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 15q14-15.1(chr15:39710935-40294591)x3 copy number gain See cases [RCV000052105] Chr15:39710935..40294591 [GRCh38]
Chr15:40003136..40586792 [GRCh37]
Chr15:37790428..38374084 [NCBI36]
Chr15:15q14-15.1		 uncertain significance
GRCh38/hg38 15q14-15.1(chr15:36531993-40787538)x3 copy number gain See cases [RCV000052341] Chr15:36531993..40787538 [GRCh38]
Chr15:36824194..41079736 [GRCh37]
Chr15:34611486..38867028 [NCBI36]
Chr15:15q14-15.1		 pathogenic
GRCh38/hg38 15q13.3-15.1(chr15:32635803-40233825)x1 copy number loss See cases [RCV000051617] Chr15:32635803..40233825 [GRCh38]
Chr15:32928004..40526026 [GRCh37]
Chr15:30715296..38313318 [NCBI36]
Chr15:15q13.3-15.1		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:98
Interacting mature miRNAs:99
Transcripts:ENST00000564211
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1191 2423 2619 2231 4907 1681 2293 4 582 1903 424 2233 7008 6375 52 3708 835 1725 1603 170

Sequence


Ensembl Acc Id: ENST00000564211
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1539,782,571 - 39,785,617 (+)Ensembl
RefSeq Acc Id: NR_135665
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381539,782,906 - 39,785,617 (+)NCBI
T2T-CHM13v2.01537,588,104 - 37,590,815 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC AC023908.3 COSMIC
Ensembl Genes ENSG00000261136 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000564211 ENTREZGENE
GTEx ENSG00000261136 GTEx
Human Proteome Map AC023908.3 Human Proteome Map
NCBI Gene LOC105370941 ENTREZGENE
RNAcentral URS0000A768DA RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AC023908.3  novel transcript, antisense to FSIP1  LOC105370941  uncharacterized LOC105370941  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC105370941  uncharacterized LOC105370941  AC023908.3  novel transcript, antisense to FSIP1  Symbol and/or name change 5135510 APPROVED