AC018557.2 (novel transcript) - Rat Genome Database

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Gene: AC018557.2 (novel transcript) Homo sapiens
Analyze
Symbol: AC018557.2
Name: novel transcript
RGD ID: 16562806
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1666,738,238 - 66,739,722 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:123
Count of miRNA genes:102
Interacting mature miRNAs:103
Transcripts:ENST00000565082
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2
Low 281 510 226 35 151 13 1143 146 638 48 323 419 22 302 757 1
Below cutoff 1146 1303 807 244 697 141 2069 1038 1603 191 717 754 110 578 1313

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000565082
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1666,738,263 - 66,739,326 (+)Ensembl
RefSeq Acc Id: ENST00000649944
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1666,738,238 - 66,739,722 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC018557.2 COSMIC
Ensembl Genes ENSG00000260558 Ensembl
GTEx ENSG00000260558 GTEx
Human Proteome Map AC018557.2 Human Proteome Map