AC126696.2 (novel transcript, antisense to SLC7A5) - Rat Genome Database

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Gene: AC126696.2 (novel transcript, antisense to SLC7A5) Homo sapiens
Analyze
Symbol: AC126696.2
Name: novel transcript, antisense to SLC7A5
RGD ID: 16562760
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1687,836,532 - 87,837,663 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:328
Count of miRNA genes:309
Interacting mature miRNAs:327
Transcripts:ENST00000563687
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1 1
Low 348 458 187 113 258 61 727 251 984 51 381 214 61 104 514 2
Below cutoff 1109 1253 653 282 705 199 2074 964 2069 109 538 662 86 474 1437 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000563687
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1687,836,532 - 87,837,663 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC126696.2 COSMIC
Ensembl Genes ENSG00000260466 Ensembl
GTEx ENSG00000260466 GTEx
Human Proteome Map AC126696.2 Human Proteome Map