AC009019.1 (novel transcript, antisense to C16orf52 and VWA3A) - Rat Genome Database

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Gene: AC009019.1 (novel transcript, antisense to C16orf52 and VWA3A) Homo sapiens
Analyze
Symbol: AC009019.1
Name: novel transcript, antisense to C16orf52 and VWA3A
RGD ID: 16562667
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1622,083,256 - 22,092,485 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:375
Count of miRNA genes:341
Interacting mature miRNAs:358
Transcripts:ENST00000568354, ENST00000568410, ENST00000568603
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 252
Low 1245 352 733 96 716 53 1159 619 2428 64 680 700 48 402 759
Below cutoff 1065 1988 815 406 729 293 2765 1412 1186 285 413 745 116 742 1759 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000568354
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1622,083,256 - 22,090,164 (-)Ensembl
RefSeq Acc Id: ENST00000568410
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1622,085,799 - 22,087,106 (-)Ensembl
RefSeq Acc Id: ENST00000568603
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1622,086,984 - 22,092,485 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC009019.1 COSMIC
Ensembl Genes ENSG00000260277 Ensembl
GTEx ENSG00000260277 GTEx
Human Proteome Map AC009019.1 Human Proteome Map