AC124798.1 (antisense to KCNJ11 and overlapping to a novel gene) - Rat Genome Database

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Gene: AC124798.1 (antisense to KCNJ11 and overlapping to a novel gene) Homo sapiens
Analyze
Symbol: AC124798.1
Name: antisense to KCNJ11 and overlapping to a novel gene
RGD ID: 16562626
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1117,380,649 - 17,383,531 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:169
Count of miRNA genes:153
Interacting mature miRNAs:155
Transcripts:ENST00000568280
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 111 2 146 12 94 12 5 13 954 60 88 81 8
Low 2311 2328 1373 412 1262 260 3605 1303 2708 339 1313 1503 164 1171 2157 2
Below cutoff 10 651 200 195 549 189 740 873 46 18 45 22 6 25 630 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000568280
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1117,380,649 - 17,383,531 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC124798.1 COSMIC
Ensembl Genes ENSG00000260196 Ensembl
GTEx ENSG00000260196 GTEx
Human Proteome Map AC124798.1 Human Proteome Map