AC007907.1 (novel transcript) - Rat Genome Database

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Gene: AC007907.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC007907.1
Name: novel transcript
RGD ID: 16562396
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1654,239,693 - 54,240,654 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:114
Count of miRNA genes:111
Interacting mature miRNAs:114
Transcripts:ENST00000557953
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 2
Low 6 4 3 4 10 3 107 6 4 11 22 22 1 9 22
Below cutoff 202 222 90 124 53 46 966 283 261 46 229 79 79 176 473

Sequence

Nucleotide Sequences

RefSeq Acc Id: ENST00000557953
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1654,239,693 - 54,240,654 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC007907.1 COSMIC
Ensembl Genes ENSG00000259759 Ensembl
GTEx ENSG00000259759 GTEx
Human Proteome Map AC007907.1 Human Proteome Map