AC023906.4 (novel transcript, antisense to GNB5) - Rat Genome Database

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Gene: AC023906.4 (novel transcript, antisense to GNB5) Homo sapiens
Analyze
Symbol: AC023906.4
Name: novel transcript, antisense to GNB5
RGD ID: 16562368
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1552,124,561 - 52,140,246 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:524
Count of miRNA genes:461
Interacting mature miRNAs:487
Transcripts:ENST00000557898, ENST00000560613
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 23 7
Low 180 204 287 41 296 36 200 77 821 24 495 190 9 69 117
Below cutoff 1964 2079 1289 513 992 363 3261 1399 2427 269 806 1196 155 1029 1977 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000557898
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1552,124,561 - 52,139,035 (+)Ensembl
RefSeq Acc Id: ENST00000560613
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1552,138,428 - 52,140,246 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC023906.4 COSMIC
Ensembl Genes ENSG00000259709 Ensembl
GTEx ENSG00000259709 GTEx
Human Proteome Map AC023906.4 Human Proteome Map