AC087477.5 (novel transcript) - Rat Genome Database

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Gene: AC087477.5 (novel transcript) Homo sapiens
Analyze
Symbol: AC087477.5
Name: novel transcript
RGD ID: 16562264
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1596,393,146 - 96,405,189 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:257
Count of miRNA genes:81
Interacting mature miRNAs:84
Transcripts:ENST00000558246, ENST00000559611, ENST00000560242, ENST00000561097
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2
Low 43 64 66 58 75 59 446 22 402 155 274 41 12 432
Below cutoff 1331 1030 683 214 318 162 1614 854 707 151 729 705 57 669 1043 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000558246
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1596,393,146 - 96,405,189 (-)Ensembl
RefSeq Acc Id: ENST00000559611
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1596,393,174 - 96,401,571 (-)Ensembl
RefSeq Acc Id: ENST00000560242
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1596,393,174 - 96,396,186 (-)Ensembl
RefSeq Acc Id: ENST00000561097
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1596,393,174 - 96,405,182 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC087477.5 COSMIC
Ensembl Genes ENSG00000259542 Ensembl
GTEx ENSG00000259542 GTEx
Human Proteome Map AC087477.5 Human Proteome Map