AC022306.1 (signal peptide peptidase-like 2A (SPPL2A) pseudogene) - Rat Genome Database

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Gene: AC022306.1 (signal peptide peptidase-like 2A (SPPL2A) pseudogene) Homo sapiens
Analyze
Symbol: AC022306.1
Name: signal peptide peptidase-like 2A (SPPL2A) pseudogene
RGD ID: 16562256
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1549,365,124 - 49,366,685 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:31
Count of miRNA genes:30
Interacting mature miRNAs:30
Transcripts:ENST00000560489
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 284 116 521 56 411 38 263 125 417 63 430 433 19 62 187
Below cutoff 2001 2367 1104 484 1068 352 3475 1902 2798 301 950 1088 139 1007 2229 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000560489
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1549,365,124 - 49,366,685 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC022306.1 COSMIC
Ensembl Genes ENSG00000259531 Ensembl
GTEx ENSG00000259531 GTEx
Human Proteome Map AC022306.1 Human Proteome Map