AC108449.2 (novel transcript, sense intronic to HMBOX1) - Rat Genome Database

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Gene: AC108449.2 (novel transcript, sense intronic to HMBOX1) Homo sapiens
Analyze
Symbol: AC108449.2
Name: novel transcript, sense intronic to HMBOX1
RGD ID: 16562172
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl829,055,935 - 29,056,685 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:227
Count of miRNA genes:220
Interacting mature miRNAs:227
Transcripts:ENST00000560865
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 164 108 431 32 624 26 903 89 440 77 311 755 11 129 543 2
Low 2269 2738 1269 568 1231 415 3443 2054 3134 330 1141 855 162 1074 2234 3 2
Below cutoff 5 139 20 19 90 19 10 54 156 11 6 2 1 1 1 10

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000560865
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl829,055,935 - 29,056,685 (+)Ensembl
RefSeq Acc Id: ENST00000687452
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl829,055,929 - 29,057,395 (+)Ensembl
RefSeq Acc Id: ENST00000687917
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl829,055,925 - 29,057,395 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC108449.2 COSMIC
Ensembl Genes ENSG00000259366 Ensembl
GTEx ENSG00000259366 GTEx
Human Proteome Map AC108449.2 Human Proteome Map