AC027176.1 (zinc finger and SCAN domain containing 5A (ZSCAN5A) pseudogene) - Rat Genome Database

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Gene: AC027176.1 (zinc finger and SCAN domain containing 5A (ZSCAN5A) pseudogene) Homo sapiens
Analyze
Symbol: AC027176.1
Name: zinc finger and SCAN domain containing 5A (ZSCAN5A) pseudogene
RGD ID: 16562114
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1589,936,492 - 89,937,005 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:137
Count of miRNA genes:121
Interacting mature miRNAs:121
Transcripts:ENST00000560204
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 1 11 1 5 4
Below cutoff 102 155 64 26 100 15 284 100 150 11 146 115 11 76 175

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000560204
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,936,492 - 89,937,005 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC027176.1 COSMIC
Ensembl Genes ENSG00000259273 Ensembl
GTEx ENSG00000259273 GTEx
Human Proteome Map AC027176.1 Human Proteome Map