AC114546.1 (novel transcript) - Rat Genome Database

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Gene: AC114546.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC114546.1
Name: novel transcript
RGD ID: 16562063
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1534,993,646 - 35,003,221 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:200
Count of miRNA genes:186
Interacting mature miRNAs:193
Transcripts:ENST00000391457, ENST00000560140
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 12 23 46 2 18 2 144 8 198 18 378 40 11 109
Below cutoff 550 562 602 109 138 58 1573 538 1532 127 345 469 52 327 1007

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000560140
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1534,993,646 - 35,003,221 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC114546.1 COSMIC
Ensembl Genes ENSG00000259181 Ensembl
GTEx ENSG00000259181 GTEx
Human Proteome Map AC114546.1 Human Proteome Map