AL133371.3 (novel transcript) - Rat Genome Database

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Gene: AL133371.3 (novel transcript) Homo sapiens
Analyze
Symbol: AL133371.3
Name: novel transcript
RGD ID: 16562033
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1420,870,278 - 20,873,848 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:375
Count of miRNA genes:184
Interacting mature miRNAs:187
Transcripts:ENST00000554983, ENST00000556197
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 3
Low 18 2 47 13 32 14 108 8 27 62 410 23 2 35
Below cutoff 562 492 477 90 344 57 1597 261 1105 156 467 414 35 361 927 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000554983
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1420,870,279 - 20,873,592 (-)Ensembl
RefSeq Acc Id: ENST00000556197
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1420,870,278 - 20,873,370 (-)Ensembl
RefSeq Acc Id: ENST00000658315
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1420,872,560 - 20,873,848 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL133371.3 COSMIC
Ensembl Genes ENSG00000259130 Ensembl
GTEx ENSG00000259130 GTEx
Human Proteome Map AL133371.3 Human Proteome Map