AC025884.2 (zinc finger, CCHC domain containing 2 (ZCCHC2) pseudogene) - Rat Genome Database

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Gene: AC025884.2 (zinc finger, CCHC domain containing 2 (ZCCHC2) pseudogene) Homo sapiens
Analyze
Symbol: AC025884.2
Name: zinc finger, CCHC domain containing 2 (ZCCHC2) pseudogene
RGD ID: 16562016
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1522,258,138 - 22,258,848 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:409
Count of miRNA genes:371
Interacting mature miRNAs:400
Transcripts:ENST00000553429
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 7 3 2 2 2 4 9 1 121 10 1
Low 235 51 269 176 232 179 381 71 368 181 587 398 8 31 61 3
Below cutoff 613 615 521 235 393 203 802 415 975 88 298 385 32 271 531 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000553429
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1522,258,138 - 22,258,848 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC025884.2 COSMIC
Ensembl Genes ENSG00000259098 Ensembl
GTEx ENSG00000259098 GTEx
Human Proteome Map AC025884.2 Human Proteome Map