AL160191.1 (novel transcript, antisense to SLC8A3) - Rat Genome Database

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Gene: AL160191.1 (novel transcript, antisense to SLC8A3) Homo sapiens
Analyze
Symbol: AL160191.1
Name: novel transcript, antisense to SLC8A3
RGD ID: 16561662
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1470,187,123 - 70,230,187 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:885
Count of miRNA genes:410
Interacting mature miRNAs:421
Transcripts:ENST00000554008, ENST00000555198, ENST00000555480
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 153
Low 18 10 17 4 413 4 332 316 102 18 245 64 1 4 296
Below cutoff 1278 625 509 182 526 91 2002 1122 2240 166 414 649 104 552 1178 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000554008
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1470,223,765 - 70,230,108 (+)Ensembl
RefSeq Acc Id: ENST00000555198
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1470,223,776 - 70,230,181 (+)Ensembl
RefSeq Acc Id: ENST00000555480
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1470,187,123 - 70,230,187 (+)Ensembl
RefSeq Acc Id: ENST00000702476
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1470,223,778 - 70,228,148 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL160191.1 COSMIC
Ensembl Genes ENSG00000258422 Ensembl
GTEx ENSG00000258422 GTEx
Human Proteome Map AL160191.1 Human Proteome Map