AC024257.1 (novel transcript) - Rat Genome Database

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Gene: AC024257.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC024257.1
Name: novel transcript
RGD ID: 16561588
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1248,231,098 - 48,284,210 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:541
Count of miRNA genes:445
Interacting mature miRNAs:468
Transcripts:ENST00000547523, ENST00000598930
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 216 29 103 1 18 1 224 6 231 17 533 142 224 1
Below cutoff 890 579 468 56 232 36 815 468 1526 99 299 473 20 241 593 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000547523
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1248,231,098 - 48,284,210 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC024257.1 COSMIC
Ensembl Genes ENSG00000258234 Ensembl
GTEx ENSG00000258234 GTEx
Human Proteome Map AC024257.1 Human Proteome Map