AC024940.3 (solute carrier family 25, member 13 (citrin) (SLC25A13) pseudogene) - Rat Genome Database

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Gene: AC024940.3 (solute carrier family 25, member 13 (citrin) (SLC25A13) pseudogene) Homo sapiens
Analyze
Symbol: AC024940.3
Name: solute carrier family 25, member 13 (citrin) (SLC25A13) pseudogene
RGD ID: 16560979
Description:
Type: processed_pseudogene
Previously known as: AC024940.4
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1231,311,617 - 31,312,029 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:132
Count of miRNA genes:131
Interacting mature miRNAs:132
Transcripts:ENST00000538551
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 39
Low 85 26 47 31 318 19 200 18 37 58 222 93 13 26 44 1
Below cutoff 726 383 470 143 335 61 1011 367 340 143 579 484 85 334 493

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000538551
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1231,311,617 - 31,312,029 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC024940.3 COSMIC
Ensembl Genes ENSG00000256176 Ensembl
GTEx ENSG00000256176 GTEx
Human Proteome Map AC024940.3 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 AC024940.3  solute carrier family 25, member 13 (citrin) (SLC25A13) pseudogene  AC024940.4  solute carrier family 25, member 13 (citrin) (SLC25A13) pseudogene  Symbol and/or name change 19259462 PROVISIONAL