AC020611.1 (chromosome 3 open reading frame 19 (C3orf19) pseudogene) - Rat Genome Database

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Gene: AC020611.1 (chromosome 3 open reading frame 19 (C3orf19) pseudogene) Homo sapiens
Analyze
Symbol: AC020611.1
Name: chromosome 3 open reading frame 19 (C3orf19) pseudogene
RGD ID: 16560877
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1264,032,412 - 64,032,665 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:100
Count of miRNA genes:98
Interacting mature miRNAs:100
Transcripts:ENST00000537101
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 51 30 41 10 12 11 140 23 85 29 83 154 3 35 89
Below cutoff 261 258 279 72 96 31 634 180 425 65 267 349 42 219 405 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000537101
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1264,032,412 - 64,032,665 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC020611.1 COSMIC
Ensembl Genes ENSG00000255780 Ensembl
GTEx ENSG00000255780 GTEx
Human Proteome Map AC020611.1 Human Proteome Map