AP000879.2 (novel transcript, sense overlapping ANO1) - Rat Genome Database

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Gene: AP000879.2 (novel transcript, sense overlapping ANO1) Homo sapiens
Analyze
Symbol: AP000879.2
Name: novel transcript, sense overlapping ANO1
RGD ID: 16560605
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1170,129,297 - 70,149,623 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:194
Count of miRNA genes:193
Interacting mature miRNAs:194
Transcripts:ENST00000530525
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 21 32 4 3 3 2 62 11 8 97 10 4 3 29
Below cutoff 452 531 260 113 68 73 945 292 171 58 524 241 43 191 513 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000530525
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1170,129,297 - 70,149,623 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AP000879.2 COSMIC
Ensembl Genes ENSG00000255143 Ensembl
GTEx ENSG00000255143 GTEx
Human Proteome Map AP000879.2 Human Proteome Map