AP001893.3 (novel transcript) - Rat Genome Database

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Gene: AP001893.3 (novel transcript) Homo sapiens
Analyze
Symbol: AP001893.3
Name: novel transcript
RGD ID: 16560453
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl11126,160,714 - 126,176,035 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:109
Interacting mature miRNAs:110
Transcripts:ENST00000532357
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1 2 1
Low 128 113 191 27 89 18 853 781 424 42 329 228 9 38 761
Below cutoff 1399 1290 906 293 440 206 2033 985 2161 168 776 772 90 728 1185

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000532357
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11126,160,714 - 126,176,035 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AP001893.3 COSMIC
Ensembl Genes ENSG00000254833 Ensembl
GTEx ENSG00000254833 GTEx
Human Proteome Map AP001893.3 Human Proteome Map