CAPS2-AS1 (CAPS2 antisense RNA 1) - Rat Genome Database

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Gene: CAPS2-AS1 (CAPS2 antisense RNA 1) Homo sapiens
Analyze
Symbol: CAPS2-AS1
Name: CAPS2 antisense RNA 1
RGD ID: 16560247
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: AC091534.1; LOC100130268; uncharacterized LOC100130268
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381275,234,740 - 75,251,865 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1275,234,700 - 75,298,508 (+)EnsemblGRCh38hg38GRCh38
GRCh371275,628,520 - 75,645,645 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12q21.1NCBI
CHM1_11275,593,801 - 75,610,094 (+)NCBICHM1_1
T2T-CHM13v2.01275,209,372 - 75,226,498 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14702039  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12q21.1-21.2(chr12:75019031-75720674)x3 copy number gain See cases [RCV000141889] Chr12:75019031..75720674 [GRCh38]
Chr12:75412811..76114454 [GRCh37]
Chr12:73699078..74400721 [NCBI36]
Chr12:12q21.1-21.2		 uncertain significance
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33		 pathogenic
GRCh38/hg38 12q15-21.2(chr12:69769737-76964217)x1 copy number loss See cases [RCV000136267] Chr12:69769737..76964217 [GRCh38]
Chr12:70163517..77357997 [GRCh37]
Chr12:68449784..75882128 [NCBI36]
Chr12:12q15-21.2		 pathogenic
GRCh38/hg38 12q21.1-22(chr12:73485697-92795805)x1 copy number loss See cases [RCV000143099] Chr12:73485697..92795805 [GRCh38]
Chr12:73879477..93189581 [GRCh37]
Chr12:72165744..91713712 [NCBI36]
Chr12:12q21.1-22		 pathogenic
GRCh38/hg38 12q15-21.2(chr12:68011417-75383054)x1 copy number loss See cases [RCV000135587] Chr12:68011417..75383054 [GRCh38]
Chr12:68405197..75776834 [GRCh37]
Chr12:66691464..74063101 [NCBI36]
Chr12:12q15-21.2		 likely pathogenic|uncertain significance
GRCh38/hg38 12q21.1-21.2(chr12:75021678-75683757)x3 copy number gain See cases [RCV000134001] Chr12:75021678..75683757 [GRCh38]
Chr12:75415458..76077537 [GRCh37]
Chr12:73701725..74363804 [NCBI36]
Chr12:12q21.1-21.2		 uncertain significance
GRCh38/hg38 12q15-21.31(chr12:70337484-81761145)x1 copy number loss See cases [RCV000051313] Chr12:70337484..81761145 [GRCh38]
Chr12:70731264..82154924 [GRCh37]
Chr12:69017531..80679055 [NCBI36]
Chr12:12q15-21.31		 pathogenic
GRCh38/hg38 12q21.1-21.2(chr12:75027258-75716971) copy number gain Anomalous pulmonary venous return [RCV003223575] Chr12:75027258..75716971 [GRCh38]
Chr12:12q21.1-21.2		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:332
Count of miRNA genes:297
Interacting mature miRNAs:307
Transcripts:ENST00000534648, ENST00000548779, ENST00000549953
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
316 741 845 705 1381 916 934 160 285 74 575 1771 1756 1 1181 255 994 758 88

Sequence


Ensembl Acc Id: ENST00000534648
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1275,295,056 - 75,298,508 (+)Ensembl
Ensembl Acc Id: ENST00000548779
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1275,234,700 - 75,251,865 (+)Ensembl
Ensembl Acc Id: ENST00000549953
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1275,235,040 - 75,295,112 (+)Ensembl
Ensembl Acc Id: ENST00000751474
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1275,234,742 - 75,250,749 (+)Ensembl
RefSeq Acc Id: NR_149000
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381275,234,740 - 75,251,865 (+)NCBI
T2T-CHM13v2.01275,209,372 - 75,226,498 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein EAW97295 (Get FASTA)   NCBI Sequence Viewer  


Additional Information

Database Acc Id Source(s)
COSMIC CAPS2-AS1 COSMIC
Ensembl Genes ENSG00000254451 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000548779 ENTREZGENE
GTEx ENSG00000254451 GTEx
Human Proteome Map CAPS2-AS1 Human Proteome Map
NCBI Gene LOC100130268 ENTREZGENE
RNAcentral URS00000544FF RNACentral
  URS00002430F4 RNACentral
  URS00005FB240 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 CAPS2-AS1  CAPS2 antisense RNA 1  LOC100130268  uncharacterized LOC100130268  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100130268  uncharacterized LOC100130268  AC091534.1  novel transcript  Symbol and/or name change 5135510 APPROVED