AC087354.1 (novel transcript) - Rat Genome Database

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Gene: AC087354.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC087354.1
Name: novel transcript
RGD ID: 16560157
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl8139,460,062 - 139,463,016 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:232
Count of miRNA genes:177
Interacting mature miRNAs:179
Transcripts:ENST00000522373
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 13 149 2 2 12 15
Low 192 24 178 76 250 78 163 70 145 158 243 372 10 2 14 4
Below cutoff 229 343 684 110 221 94 481 182 788 99 506 596 16 135 303

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000522373
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8139,460,062 - 139,463,016 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC087354.1 COSMIC
Ensembl Genes ENSG00000254258 Ensembl
GTEx ENSG00000254258 GTEx
Human Proteome Map AC087354.1 Human Proteome Map