AC104232.1 (novel transcript) - Rat Genome Database

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Gene: AC104232.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC104232.1
Name: novel transcript
RGD ID: 16560045
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl864,801,236 - 64,817,573 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:291
Count of miRNA genes:266
Interacting mature miRNAs:278
Transcripts:ENST00000522106, ENST00000523769
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 8 273 3
Low 8 376 257 50 615 50 83 8 92 57 399 337 2 12 48
Below cutoff 928 1251 1250 435 630 308 2509 643 2511 236 685 1006 136 794 1438 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000522106
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl864,801,236 - 64,817,573 (-)Ensembl
RefSeq Acc Id: ENST00000523769
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl864,801,358 - 64,805,700 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC104232.1 COSMIC
Ensembl Genes ENSG00000254006 Ensembl
GTEx ENSG00000254006 GTEx
Human Proteome Map AC104232.1 Human Proteome Map