AC103409.1 (novel transcript) - Rat Genome Database

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Gene: AC103409.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC103409.1
Name: novel transcript
RGD ID: 16559994
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl891,542,924 - 91,907,619 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:368
Count of miRNA genes:322
Interacting mature miRNAs:352
Transcripts:ENST00000518416, ENST00000521199
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 2
Low 9 3 5 1 33 1 39 2 5 13 40 31 1
Below cutoff 202 176 192 46 172 40 739 160 455 94 515 301 15 269 411 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000518416
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl891,564,980 - 91,907,453 (-)Ensembl
RefSeq Acc Id: ENST00000521199
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl891,542,924 - 91,907,619 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC103409.1 COSMIC
Ensembl Genes ENSG00000253901 Ensembl
GTEx ENSG00000253901 GTEx
Human Proteome Map AC103409.1 Human Proteome Map