AC087664.2 (novel transcript) - Rat Genome Database

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Gene: AC087664.2 (novel transcript) Homo sapiens
Analyze
Symbol: AC087664.2
Name: novel transcript
RGD ID: 16559980
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl859,601,319 - 59,620,227 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:161
Count of miRNA genes:154
Interacting mature miRNAs:161
Transcripts:ENST00000521274, ENST00000522898
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 2 1 2 2 7 297 1
Below cutoff 297 13 46 15 66 15 52 37 55 51 178 113 3 8 11

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000521274
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl859,601,404 - 59,613,775 (+)Ensembl
RefSeq Acc Id: ENST00000522898
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl859,601,378 - 59,607,005 (+)Ensembl
RefSeq Acc Id: ENST00000653946
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl859,601,319 - 59,620,223 (+)Ensembl
RefSeq Acc Id: ENST00000662814
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl859,601,378 - 59,620,223 (+)Ensembl
RefSeq Acc Id: ENST00000666736
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl859,601,338 - 59,620,227 (+)Ensembl
RefSeq Acc Id: ENST00000667689
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl859,601,378 - 59,620,221 (+)Ensembl
RefSeq Acc Id: ENST00000667798
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl859,601,378 - 59,620,154 (+)Ensembl
RefSeq Acc Id: ENST00000668218
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl859,601,352 - 59,620,222 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC087664.2 COSMIC
Ensembl Genes ENSG00000253879 Ensembl
GTEx ENSG00000253879 GTEx
Human Proteome Map AC087664.2 Human Proteome Map